hub genetrek_Institut_Pasteur_Hub
shortLabel Hub for genetrek.pasteur.fr website data
longLabel Hub gathering data from the Human Genetics and Cognitive Function lab at Institut Pasteur (see http://genetrek.pasteur.fr)
descriptionUrl http://genetrek.pasteur.fr
genomesFile genetrek_pasteur_genomes.txt
email  thomas.bourgeron@pasteur.fr
useOneFile on

genome hg38

track  autismOR
bigDataUrl http://jerikoo.free.fr/UCSC/genetrek_pasteur_autismOR.bb
mouseOver $name gene-level autism OR: $autismOR
shortLabel autism OR
longLabel autism OR for autism-associated and constrained genes from Rolland et al. Nat Med. 2023
type bigBed 9 + 2
visibility full
color 100,50,0
useScore 1
mouseOver $name autism OR: $autismOR

track  NDDassociation
bigDataUrl http://jerikoo.free.fr/UCSC/genetrek_pasteur_NDDassociation.bb
shortLabel NDD association
longLabel NDD association from Leblond et al. Mol. Cell. Neuro. 2021
type bigBed 9 + 2
visibility full
color 100,50,0
useScore 1
mouseOver $name NDD association: $NDDassociation

track  SLoF_diagnosed_individuals
bigDataUrl http://jerikoo.free.fr/UCSC/genetrek_pasteur_SLoF_diagnosed_individuals.bb
shortLabel S-LoFs diag. individuals
longLabel S-LoF variants among diagnosed individuals from Rolland et al. Nat. Med. 2023
type bigBed 9 + 6
visibility pack
color 255,0,0
itemRgb On
mouseOver $name;$consequence

track  SLoF_undiagnosed_siblings
bigDataUrl http://jerikoo.free.fr/UCSC/genetrek_pasteur_SLoF_undiagnosed_siblings.bb
shortLabel S-LoFs undiag. siblings
longLabel S-LoF variants among undiagnosed siblings from Rolland et al. Nat. Med. 2023
type bigBed 9 + 6
visibility pack
color 0,0,255
itemRgb On
mouseOver $name;$consequence

track  SLoF_undiagnosed_parents
bigDataUrl http://jerikoo.free.fr/UCSC/genetrek_pasteur_SLoF_undiagnosed_parents.bb
shortLabel S-LoFs undiag. parents
longLabel S-LoF variants among undiagnosed parents from Rolland et al. Nat. Med. 2023
type bigBed 9 + 5
visibility pack
color 0,0,255
itemRgb On
mouseOver $name;$consequence

track  SLoF_undiagnosed_population
bigDataUrl http://jerikoo.free.fr/UCSC/genetrek_pasteur_SLoF_undiagnosed_population.bb
shortLabel S-LoFs undiag. population
longLabel S-LoF variants among undiagnosed individuals from UK-Biobank and iPSYCH from Rolland et al. Nat. Med. 2023
type bigBed 9 + 5
visibility pack
color 0,0,255
itemRgb On
mouseOver $name;$consequence